I’m back! (Part 2)

One other thing I’m going to try to use this blog for is to help me keep track of some of the tools I’m using for an RA project this year.  (“RA” in the “Research Assistant” sense, not the “Resident Advisor” sense.)  I’m studying metagenomics under Yuzhen Ye, specifically the automated functional prediction based on phylogenetic profiling (which is a fancy way of saying I want to figure out what the various pieces I’m working with do by comparing them with related genes in other organisms for which we know the function).

Needless to say, this new responsibility requires me to use a lot of tools that I’ve never heard of before, and I’ll feature some of them here, mainly so I can summarize the way they work and the way one uses them without having to refer back to the documention (which often is unclear, confusing, incomplete, or over-complicated).  Hopefully other people who come along after me can use these little tutorials and save themselves some time figuring things out.  I’m going to start out with a tool called RAMMCAP.

I’m back!

Well, I’ve let this go way too long, so I’ve come up with a method to keep me working on this blog periodically.  I’m going to blog my notes from my various classes, or at least what I’m getting out of them, which should put me at about 7 posts a week for the next several weeks.  Time to get started!

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Hello world!

Hi!  This is a new blog specifically for the I101 class I’m AI’ing for this semester.  (An AI is an “associate instructor,” also known as a TA or “teaching assistant.”)  What do you think of it?

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